PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_188310_mhzu.t2
Common NameM341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27645.3 Da    PI: 9.9919
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_188310_mhzu.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-311968150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Bv8_188310_mhzu.t2 19 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 68
                        79***********************************************8 PP

2K-box102.84.5e-34901896100
               K-box   6 gks.leeakaeslqqelakLkkeienLqreq....RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         g   ++ea+a+++qqe+akL+++i++  +++    Rh++Ge+L+sLs+keL++Le++Le+++++iRskKnell+++ie +qk+e el+++n
  Bv8_188310_mhzu.t2  90 GAGsVAEANAQYYQQEAAKLRNQIRTATENNrllsRHMMGEGLSSLSMKELKNLETKLERGISRIRSKKNELLFAEIEFMQKREIELHNNN 180
                         333499********************9966423338******************************************************* PP

               K-box  92 kaLrkklee 100
                         + Lr+++ e
  Bv8_188310_mhzu.t2 181 QFLRARISE 189
                         ****99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.0341171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-321285IPR002100Transcription factor, MADS-box
CDDcd002658.10E-431288No hitNo description
PRINTSPR004044.3E-331333IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001367IPR002100Transcription factor, MADS-box
PfamPF003199.0E-272067IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-333348IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-334869IPR002100Transcription factor, MADS-box
PfamPF014865.2E-2397187IPR002487Transcription factor, K-box
PROSITE profilePS5129713.95999193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEGSPSSQRK MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS  60
RGRLYEYANH SCSVKGTIDR YKKACSDQSG AGSVAEANAQ YYQQEAAKLR NQIRTATENN  120
RLLSRHMMGE GLSSLSMKEL KNLETKLERG ISRIRSKKNE LLFAEIEFMQ KREIELHNNN  180
QFLRARISEN ERAQQSMSLM PGGSDYDLVP SQSFDSRNYF QVNALQPSSQ YARQDQTPLQ  240
LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201169159Myocyte-specific enhancer factor 2B
1tqe_Q2e-201169159Myocyte-specific enhancer factor 2B
1tqe_R2e-201169159Myocyte-specific enhancer factor 2B
1tqe_S2e-201169159Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1169420.0EF116942.1 Beta vulgaris MADS-BOX protein (M341) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687169.11e-180PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_010687174.11e-180PREDICTED: floral homeotic protein AGAMOUS isoform X5
RefseqXP_010687175.11e-180PREDICTED: floral homeotic protein AGAMOUS isoform X5
RefseqXP_010687176.11e-180PREDICTED: floral homeotic protein AGAMOUS isoform X5
SwissprotQ408721e-132AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0J8BQS51e-180A0A0J8BQS5_BETVU; Uncharacterized protein
TrEMBLA1EAG01e-180A1EAG0_BETVU; MADS-BOX protein
STRINGVIT_10s0003g02070.t011e-125(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-109MIKC_MADS family protein